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Krt87 keratin 87 [ Mus musculus (house mouse) ]

Gene ID: 406219, updated on 23-Jun-2021

Summary

Official Symbol
Krt87provided by MGI
Official Full Name
keratin 87provided by MGI
Primary source
MGI:MGI:3665486
See related
Ensembl:ENSMUSG00000047641
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
K83; K87; Krt8; Krt83; Krt2-2; Krt2-25
Expression
Biased expression in colon adult (RPKM 1.7), ovary adult (RPKM 0.8) and 11 other tissues See more
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Genomic context

See Krt87 in Genome Data Viewer
Location:
15; 15 F2
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101329371..101336685, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101431490..101438804, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101261921..101269235, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35853 Neighboring gene predicted gene 671 Neighboring gene keratin 7 Neighboring gene keratin 88 Neighboring gene keratin 81

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
keratin, type II cuticular 87
Names
keratin complex 2, basic, gene 25
keratin, type II cuticular Hb3
keratin-83
type II hair keratin Hb3
type-II keratin Kb23
type-II keratin Kb25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003668.2NP_001003668.2  keratin, type II cuticular 87

    See identical proteins and their annotated locations for NP_001003668.2

    Status: VALIDATED

    Source sequence(s)
    AA755006, BC139321
    Consensus CDS
    CCDS27852.1
    UniProtKB/Swiss-Prot
    Q6IMF0
    Related
    ENSMUSP00000080613.4, ENSMUST00000081945.5
    Conserved Domains (3) summary
    pfam00038
    Location:110421
    Filament; Intermediate filament protein
    pfam16208
    Location:4107
    Keratin_2_head; Keratin type II head
    cl23720
    Location:320388
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101329371..101336685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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