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Krt77 keratin 77 [ Mus musculus (house mouse) ]

Gene ID: 406220, updated on 23-Jun-2021

Summary

Official Symbol
Krt77provided by MGI
Official Full Name
keratin 77provided by MGI
Primary source
MGI:MGI:3588209
See related
Ensembl:ENSMUSG00000067594
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
K77; mK1b; CK-1B; K1emb; Krt239; 4732484G22Rik
Expression
Biased expression in mammary gland adult (RPKM 6.1), limb E14.5 (RPKM 5.5) and 6 other tissues See more
Orthologs
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Genomic context

See Krt77 in Genome Data Viewer
Location:
15; 15 F2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101767166..101778141, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101858731..101869706, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101690287..101700049, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35972 Neighboring gene keratin 1 Neighboring gene keratin 76 Neighboring gene keratin 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
keratin, type II cytoskeletal 1b
Names
cytokeratin-1B
embryonic type II keratin 1
keratin 1b
keratin complex 2, basic, gene 39
type II keratin Kb39
type-II intermediate filament protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003667.2NP_001003667.1  keratin, type II cytoskeletal 1b

    See identical proteins and their annotated locations for NP_001003667.1

    Status: VALIDATED

    Source sequence(s)
    AA880500, AC104862, AK132513, BK003993
    Consensus CDS
    CCDS27865.1
    UniProtKB/Swiss-Prot
    Q6IFZ6
    UniProtKB/TrEMBL
    Q08EK5
    Related
    ENSMUSP00000085311.6, ENSMUST00000087996.7
    Conserved Domains (2) summary
    pfam00038
    Location:166479
    Filament; Intermediate filament protein
    pfam16208
    Location:51163
    Keratin_2_head; Keratin type II head

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101767166..101778141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521140.1XP_006521203.1  keratin, type II cytoskeletal 1b isoform X1

    Conserved Domains (2) summary
    pfam00038
    Location:166479
    Filament; Intermediate filament protein
    pfam16208
    Location:51163
    Keratin_2_head; Keratin type II head
  2. XM_017316690.1XP_017172179.1  keratin, type II cytoskeletal 1b isoform X2

    Conserved Domains (1) summary
    pfam00038
    Location:1234
    Filament; Intermediate filament protein
  3. XM_030248628.1XP_030104488.1  keratin, type II cytoskeletal 1b isoform X3

    Conserved Domains (1) summary
    pfam00038
    Location:1234
    Filament; Intermediate filament protein
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