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exoc6 exocyst complex component 6 [ Danio rerio (zebrafish) ]

Gene ID: 406591, updated on 5-Jan-2022

Summary

Official Symbol
exoc6provided by ZNC
Official Full Name
exocyst complex component 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2511
See related
Ensembl:ENSDARG00000020521
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77548
Summary
Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Is expressed in nervous system; optic primordium; optic vesicle; ventral mesenchyme; and ventral mesoderm. Orthologous to human EXOC6 (exocyst complex component 6). [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See exoc6 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
25
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (8968309..9087561, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (8930470..9049718, complement)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (9722513..9841763, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 3b Neighboring gene uncharacterized LOC108191699 Neighboring gene cytochrome P450, family 26, subfamily A, polypeptide 1 Neighboring gene ADAM metallopeptidase domain 8b Neighboring gene orexin receptor type 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within exocytosis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
exocyst complex component 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213300.1NP_998465.1  exocyst complex component 6

    See identical proteins and their annotated locations for NP_998465.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068986
    UniProtKB/TrEMBL
    Q6NTH9
    Related
    ENSDART00000022163.9
    Conserved Domains (2) summary
    pfam04091
    Location:464706
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92177
    I_LWEQ; I/LWEQ domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    8968309..9087561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480047.1XP_021335722.1  exocyst complex component 6 isoform X5

    Conserved Domains (2) summary
    pfam04091
    Location:464770
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92177
    I_LWEQ; I/LWEQ domain
  2. XM_005156063.3XP_005156120.1  exocyst complex component 6 isoform X4

    Conserved Domains (2) summary
    pfam04091
    Location:464770
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92177
    I_LWEQ; I/LWEQ domain
  3. XM_021480046.1XP_021335721.1  exocyst complex component 6 isoform X3

    Conserved Domains (2) summary
    pfam04091
    Location:464780
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92177
    I_LWEQ; I/LWEQ domain
  4. XM_021480045.1XP_021335720.1  exocyst complex component 6 isoform X1

    Conserved Domains (2) summary
    pfam04091
    Location:464780
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92177
    I_LWEQ; I/LWEQ domain
  5. XM_005156065.4XP_005156122.1  exocyst complex component 6 isoform X6

    Related
    ENSDARP00000112410.2, ENSDART00000125230.3
    Conserved Domains (2) summary
    pfam04091
    Location:462768
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:90175
    I_LWEQ; I/LWEQ domain
  6. XM_017358444.2XP_017213933.1  exocyst complex component 6 isoform X7

  7. XM_005156061.4XP_005156118.1  exocyst complex component 6 isoform X2

    Conserved Domains (2) summary
    pfam04091
    Location:462778
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:90175
    I_LWEQ; I/LWEQ domain
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