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canx calnexin [ Danio rerio (zebrafish) ]

Gene ID: 406757, updated on 22-Jun-2021

Summary

Official Symbol
canxprovided by ZNC
Official Full Name
calnexinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2797
See related
Ensembl:ENSDARG00000037488
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63524; wu:fe06b12
Orthologs
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Genomic context

See canx in Genome Data Viewer
Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (16432738..16476841, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (16127085..16171188, complement)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (14115111..14159238, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene leukotriene C4 synthase Neighboring gene mastermind-like transcriptional coactivator 1 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene sequestosome 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within posterior lateral line development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
 
involved_in ubiquitin-dependent ERAD pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213448.1NP_998613.1  calnexin precursor

    See identical proteins and their annotated locations for NP_998613.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054903
    UniProtKB/TrEMBL
    Q7SYE1
    Related
    ENSDARP00000083454.4, ENSDART00000089021.5
    Conserved Domains (1) summary
    pfam00262
    Location:79448
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    16432738..16476841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307813.3XP_009306088.1  calnexin isoform X1

    See identical proteins and their annotated locations for XP_009306088.1

    UniProtKB/TrEMBL
    F1QKS4
    Conserved Domains (1) summary
    pfam00262
    Location:79448
    Calreticulin; Calreticulin family
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