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BC031181 cDNA sequence BC031181 [ Mus musculus (house mouse) ]

Gene ID: 407819, updated on 23-Jun-2021

Summary

Official Symbol
BC031181provided by MGI
Official Full Name
cDNA sequence BC031181provided by MGI
Primary source
MGI:MGI:3039614
See related
Ensembl:ENSMUSG00000036299
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E14 (RPKM 40.0), CNS E18 (RPKM 39.0) and 28 other tissues See more
Orthologs
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Genomic context

See BC031181 in Genome Data Viewer
Location:
18; 18 E3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75138910..75143006)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75005839..75009935)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75165554..75169587)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23301 Neighboring gene predicted gene, 26202 Neighboring gene ribosomal protein L17 Neighboring gene dymeclin Neighboring gene predicted gene, 52344 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in lipid droplet ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
UPF0729 protein C18orf32 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001181.4NP_001001181.1  UPF0729 protein C18orf32 homolog isoform 1

    See identical proteins and their annotated locations for NP_001001181.1

    Status: VALIDATED

    Source sequence(s)
    BC016084, BY129096, BY512913
    Consensus CDS
    CCDS37859.1
    UniProtKB/Swiss-Prot
    Q91WE4
    Related
    ENSMUSP00000158256.2, ENSMUST00000237263.2
    Conserved Domains (1) summary
    pfam14975
    Location:242
    DUF4512; Domain of unknown function (DUF4512)
  2. NM_001358303.1NP_001345232.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK077642, BY129096, BY512913
    Consensus CDS
    CCDS37859.1
    Related
    ENSMUSP00000040450.5, ENSMUST00000040284.6
    Conserved Domains (1) summary
    pfam14975
    Location:242
    DUF4512; Domain of unknown function (DUF4512)
  3. NM_001358304.1NP_001345233.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    BY129096, BY512913, CK620827
    Consensus CDS
    CCDS37859.1
    Related
    ENSMUSP00000157657.2, ENSMUST00000236421.2
    Conserved Domains (1) summary
    pfam14975
    Location:242
    DUF4512; Domain of unknown function (DUF4512)
  4. NM_001358305.1NP_001345234.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC125122
    Consensus CDS
    CCDS37859.1
    Conserved Domains (1) summary
    pfam14975
    Location:242
    DUF4512; Domain of unknown function (DUF4512)
  5. NM_001358306.1NP_001345235.1  UPF0729 protein C18orf32 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125122
    Conserved Domains (1) summary
    pfam14975
    Location:2565
    DUF4512; Domain of unknown function (DUF4512)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75138910..75143006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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