U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

saal1 serum amyloid A like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 407882, updated on 5-Mar-2024

Summary

Official Symbol
saal1provided by Xenbase
Official Full Name
serum amyloid A like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5809569
See related
Ensembl:ENSXETG00000018990
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (1078885..1098884, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683642.1 (54757..63274)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 77 Neighboring gene tryptophan hydroxylase 1 Neighboring gene general transcription factor IIH subunit 1 Neighboring gene ATP binding cassette subfamily C member 8

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC69312

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in positive regulation of synoviocyte proliferation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213696.2NP_998861.2  protein saal1

    Status: VALIDATED

    Source sequence(s)
    AL645050, BC067996
    UniProtKB/Swiss-Prot
    Q6NVK9

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    1078885..1098884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899975.1XP_031755835.1  protein saal1 isoform X1

    UniProtKB/TrEMBL
    A0A803K299, F6ZR09
    Related
    ENSXETP00000114409.1, ENSXETT00000122026.1