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cpe carboxypeptidase E [ Danio rerio (zebrafish) ]

Gene ID: 407979, updated on 6-May-2021

Summary

Official Symbol
cpeprovided by ZNC
Official Full Name
carboxypeptidase Eprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-68
See related
Ensembl:ENSDARG00000055874
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:85981; si:ch211-198g9.2
Orthologs
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Genomic context

See cpe in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (20866858..20911278, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (20173921..20218393, complement)
103 previous assembly Zv9 (GCF_000002035.4) 1 NC_007112.5 (19648162..19692640, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 Neighboring gene tolloid-like 1 Neighboring gene si:dkeyp-72g6.2 Neighboring gene methylsterol monooxygenase 1 Neighboring gene kelch-like family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metallocarboxypeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metallocarboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in peptide metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
carboxypeptidase E
NP_999975.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214810.2NP_999975.1  carboxypeptidase E precursor

    See identical proteins and their annotated locations for NP_999975.1

    Status: VALIDATED

    Source sequence(s)
    BX119983, CT583646
    UniProtKB/TrEMBL
    Q6NSM5
    Related
    ENSDARP00000072733.5, ENSDART00000078271.6
    Conserved Domains (2) summary
    cd03865
    Location:27349
    M14_CPE; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase E subgroup
    cd11308
    Location:353425
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    20866858..20911278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394476.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    123070..167593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395211.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    4610..4999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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