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Zfp738 zinc finger protein 738 [ Mus musculus (house mouse) ]

Gene ID: 408068, updated on 23-Jun-2021

Summary

Official Symbol
Zfp738provided by MGI
Official Full Name
zinc finger protein 738provided by MGI
Primary source
MGI:MGI:3040706
See related
Ensembl:ENSMUSG00000048280
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3830402I07Rik; 6720487G11Rik
Expression
Broad expression in CNS E18 (RPKM 2.4), CNS E14 (RPKM 2.2) and 23 other tissues See more
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Genomic context

See Zfp738 in Genome Data Viewer
Location:
13; 13 B3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (67815560..67831631, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67667441..67683512, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (67768378..67784449, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 729a Neighboring gene predicted gene, 46439 Neighboring gene zinc finger protein 65 Neighboring gene zinc finger protein 85, opposite strand Neighboring gene zinc finger protein 85

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transposon integration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
zinc finger protein 738
Names
Novel Zinc finger, C2H2 type containing protein (3830402I07Rik)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001187.3NP_001001187.2  zinc finger protein 738

    Status: VALIDATED

    Source sequence(s)
    BC082605, BY752525
    Consensus CDS
    CCDS36716.2
    UniProtKB/TrEMBL
    B8JJX8
    Related
    ENSMUSP00000121275.3, ENSMUST00000137496.10
    Conserved Domains (5) summary
    smart00349
    Location:1573
    KRAB; krueppel associated box
    COG5048
    Location:257642
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:485505
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1554
    KRAB; KRAB box
    pfam13465
    Location:497522
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    67815560..67831631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175676.2: Suppressed sequence

    Description
    NM_175676.2: This RefSeq was permanently suppressed because the CDS was partial.
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