These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001277110.2 → NP_001264039.1  lactadherin isoform 1 precursor

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

   Source sequence(s)

   JAENSK010000245

   UniProtKB/TrEMBL

   E1C0K5

   Related

   ENSGALP00010028762.1, ENSGALT00010048678.1

   Conserved Domains (4) summary

   smart00231
   Location:314 → 472

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain

   cd00054
   Location:109 → 144

   EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

   cd00057
   Location:317 → 471

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

   pfam00008
   Location:69 → 105

   EGF; EGF-like domain

2. NM_001277111.2 → NP_001264040.1  lactadherin isoform 2 precursor

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.

   Source sequence(s)

   JAENSK010000245

   Conserved Domains (4) summary

   smart00231
   Location:308 → 466

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain

   cd00054
   Location:109 → 144

   EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

   cd00057
   Location:311 → 465

   FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

   pfam00008
   Location:69 → 105

   EGF; EGF-like domain

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

   Range

   13046524..13053821

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

   Range

   12924289..12931564

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)