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CATSPER4 cation channel sperm associated 4 [ Gallus gallus (chicken) ]

Gene ID: 417033, updated on 4-Sep-2021

Summary

Symbol
CATSPER4provided by CGNC
Full Name
cation channel sperm associated 4provided by CGNC
Primary source
CGNC:6333
See related
Ensembl:ENSGALG00000008357
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TPCN1
Orthologs
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Genomic context

See CATSPER4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
30
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (12595871..12651162, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 15 NC_052587.1 (12608047..12663351, complement)
104 previous assembly GRCg6a (GCF_000002315.5) 15 NC_006102.5 (12876678..12931987, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 15 NC_006102.4 (12659253..12714565, complement)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
two pore calcium channel protein 1
Names
two pore segment channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12595871..12651162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025155738.2XP_025011506.1  two pore calcium channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:381632
    Ion_trans; Ion transport protein
  2. XM_004934490.4XP_004934547.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    E1BQ97
    Conserved Domains (1) summary
    pfam00520
    Location:440691
    Ion_trans; Ion transport protein
  3. XM_015294861.3XP_015150347.1  two pore calcium channel protein 1 isoform X5

    Conserved Domains (1) summary
    pfam00520
    Location:372623
    Ion_trans; Ion transport protein
  4. XM_004934491.4XP_004934548.1  two pore calcium channel protein 1 isoform X2

    Conserved Domains (1) summary
    pfam00520
    Location:413664
    Ion_trans; Ion transport protein
  5. XM_004934492.4XP_004934549.1  two pore calcium channel protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:440691
    Ion_trans; Ion transport protein

RNA

  1. XR_001469170.3 RNA Sequence

  2. XR_003077919.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12608047..12663351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040685221.1XP_040541155.1  two pore calcium channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:381632
    Ion_trans; Ion transport protein
  2. XM_040685218.1XP_040541152.1  two pore calcium channel protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:440691
    Ion_trans; Ion transport protein
  3. XM_040685222.1XP_040541156.1  two pore calcium channel protein 1 isoform X5

    Conserved Domains (1) summary
    pfam00520
    Location:372623
    Ion_trans; Ion transport protein
  4. XM_040685219.1XP_040541153.1  two pore calcium channel protein 1 isoform X2

    Conserved Domains (1) summary
    pfam00520
    Location:413664
    Ion_trans; Ion transport protein
  5. XM_040685220.1XP_040541154.1  two pore calcium channel protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:440691
    Ion_trans; Ion transport protein

RNA

  1. XR_005854503.1 RNA Sequence

  2. XR_005854504.1 RNA Sequence

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