U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CATSPER4 cation channel sperm associated 4 [ Gallus gallus (chicken) ]

Gene ID: 417033, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Symbol
CATSPER4provided by CGNC
Full Name
cation channel sperm associated 4provided by CGNC
Primary source
CGNC:6333
See related
Ensembl:ENSGALG00010000457
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TPCN1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CATSPER4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
31
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (12595871..12651155, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (12608047..12663344, complement)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene serine dehydratase like Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
two pore calcium channel protein 1; two pore channel protein 1
Names
two pore segment channel 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12595871..12651155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025155738.3 → XP_025011506.1  two pore channel protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0X5C1
    Related
    ENSGALP00010000507.1, ENSGALT00010000949.1
    Conserved Domains (1) summary
    pfam00520
    Location:381 → 632
    Ion_trans; Ion transport protein

  2. XM_004934490.5 → XP_004934547.1  two pore channel protein 1 isoform X1

    UniProtKB/TrEMBL
    E1BQ97
    Related
    ENSGALP00010000508.1, ENSGALT00010000953.1
    Conserved Domains (1) summary
    pfam00520
    Location:440 → 691
    Ion_trans; Ion transport protein

  3. XM_046901423.1 → XP_046757379.1  two pore channel protein 1 isoform X2

  4. XM_015294861.4 → XP_015150347.1  two pore channel protein 1 isoform X6

    Conserved Domains (1) summary
    pfam00520
    Location:372 → 623
    Ion_trans; Ion transport protein

  5. XM_004934491.5 → XP_004934548.1  two pore channel protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:413 → 664
    Ion_trans; Ion transport protein

  6. XM_004934492.5 → XP_004934549.1  two pore channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:440 → 691
    Ion_trans; Ion transport protein

RNA

  1. XR_001469170.4 RNA Sequence

  2. XR_003077919.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12608047..12663344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040685221.2 → XP_040541155.1  two pore channel protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0X5C1
    Conserved Domains (1) summary
    pfam00520
    Location:381 → 632
    Ion_trans; Ion transport protein

  2. XM_040685218.2 → XP_040541152.1  two pore channel protein 1 isoform X1

    UniProtKB/TrEMBL
    E1BQ97
    Conserved Domains (1) summary
    pfam00520
    Location:440 → 691
    Ion_trans; Ion transport protein

  3. XM_046928285.1 → XP_046784241.1  two pore channel protein 1 isoform X2

  4. XM_040685222.2 → XP_040541156.1  two pore channel protein 1 isoform X6

    Conserved Domains (1) summary
    pfam00520
    Location:372 → 623
    Ion_trans; Ion transport protein

  5. XM_040685219.2 → XP_040541153.1  two pore channel protein 1 isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:413 → 664
    Ion_trans; Ion transport protein

  6. XM_040685220.2 → XP_040541154.1  two pore channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:440 → 691
    Ion_trans; Ion transport protein

RNA

  1. XR_005854503.2 RNA Sequence

  2. XR_005854504.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.