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CG42404 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41842, updated on 10-May-2024

Summary

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Official Symbol
CG42404provided by FlyBase
Primary source
FLYBASE:FBgn0259823
Locus tag
Dmel_CG42404
See related
AllianceGenome:FB:FBgn0259823
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:SD12744; CG31154; CG34128; CG4285; Dmel\CG42404; lincRNA.S6902
Old locus tag
Dmel_CG34128; Dmel_CG4285
Summary
Predicted to be active in membrane. Is expressed in embryonic/larval central nervous system; eye disc; larval caeca region; photoreceptor cell; and ring gland. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG42404 in Genome Data Viewer
Location:
88E5-88E6; 3-56 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15250094..15257765)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11075816..11083487)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Heat shock protein 70 cognate 4 Neighboring gene Ammonium transporter Neighboring gene eukaryotic translation initiation factor 2 subunit gamma Neighboring gene Suppressor of variegation 3-9 Neighboring gene Set

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An Interscholastic Network To Generate LexA Enhancer Trap Lines in Drosophila. Kockel L, et al. G3 (Bethesda), 2019 Jul 9. PMID 31040111, Free PMC Article
  2. Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of Drosophila. Hazelett DJ, et al. G3 (Bethesda), 2012 Jul. PMID 22870402, Free PMC Article
  3. A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. Molnar C, et al. Genetics, 2006 Nov. PMID 16980395, Free PMC Article
  4. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
  5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG42404-PD
CG42404-PE
CG42404-PF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    15250094..15257765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001043248.2 → NP_001036713.2  uncharacterized protein Dmel_CG42404, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036713.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0C4DHG7
    Conserved Domains (1) summary
    cl17735
    Location:47 → 89
    VWC; von Willebrand factor type C domain

  2. NM_001260189.2 → NP_001247118.1  uncharacterized protein Dmel_CG42404, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247118.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VFA8
    Conserved Domains (1) summary
    smart00214
    Location:32 → 89
    VWC; von Willebrand factor (vWF) type C domain

  3. NM_142180.4 → NP_650437.4  uncharacterized protein Dmel_CG42404, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650437.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VFA8
    Conserved Domains (1) summary
    smart00214
    Location:32 → 89
    VWC; von Willebrand factor (vWF) type C domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0C4DHG7 A0A0C4DHG7
Q8MRY6 Q8MRY6
Q9VFA8 Q9VFA8

Gene LinkOut

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