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NUP58 nucleoporin 58 [ Gallus gallus (chicken) ]

Gene ID: 418937, updated on 6-Jun-2024

Summary

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Symbol
NUP58provided by CGNC
Full Name
nucleoporin 58provided by CGNC
Primary source
CGNC:12853
See related
Ensembl:ENSGALG00010005988
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
NUPL1
Orthologs
human mouse all
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Genomic context

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See NUP58 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (176883266..176923255, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (176968451..177008494, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8A2 Neighboring gene uncharacterized LOC121113404 Neighboring gene shisa family member 2 Neighboring gene uncharacterized LOC107052157 Neighboring gene myotubularin related protein 6 Neighboring gene uncharacterized LOC124417633 Neighboring gene APC membrane recruitment protein 2 Neighboring gene spermatogenesis associated 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleocytoplasmic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin p58/p45
Names
nucleoporin 58kDa
nucleoporin like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030829.2 → NP_001026000.1  nucleoporin p58/p45

    See identical proteins and their annotated locations for NP_001026000.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000027
    UniProtKB/TrEMBL
    A0A8V0XJS7, F6RCM2, Q5ZKL1
    Related
    ENSGALP00010008429.1, ENSGALT00010014366.1
    Conserved Domains (1) summary
    pfam15967
    Location:38 → 601
    Nucleoporin_FG2; Nucleoporin FG repeated region

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    176883266..176923255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040700150.1 → XP_040556084.1  nucleoporin p58/p45 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XJS7
    Conserved Domains (1) summary
    pfam05557
    Location:258 → 425
    MAD; Mitotic checkpoint protein

  2. XM_015278007.3 → XP_015133493.1  nucleoporin p58/p45 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XJS7
    Conserved Domains (1) summary
    pfam15967
    Location:38 → 547
    Nucleoporin_FG2; Nucleoporin FG repeated region

  3. XM_040700148.2 → XP_040556082.1  nucleoporin p58/p45 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XJS7
    Conserved Domains (1) summary
    pfam05557
    Location:257 → 424
    MAD; Mitotic checkpoint protein

  4. XM_015278013.3 → XP_015133499.1  nucleoporin p58/p45 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PUQ9, A0A8V0XJS7
    Related
    ENSGALP00010008428.1, ENSGALT00010014362.1
    Conserved Domains (1) summary
    pfam15967
    Location:38 → 569
    Nucleoporin_FG2; Nucleoporin FG repeated region

  5. XM_015278003.3 → XP_015133489.1  nucleoporin p58/p45 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJS7
    Conserved Domains (1) summary
    pfam15967
    Location:38 → 602
    Nucleoporin_FG2; Nucleoporin FG repeated region

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    176968451..177008494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908314.1 → XP_046764270.1  nucleoporin p58/p45 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XJS7

  2. XM_046908311.1 → XP_046764267.1  nucleoporin p58/p45 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XJS7

  3. XM_046908313.1 → XP_046764269.1  nucleoporin p58/p45 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XJS7

  4. XM_046908312.1 → XP_046764268.1  nucleoporin p58/p45 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PUQ9, A0A8V0XJS7

  5. XM_046908310.1 → XP_046764266.1  nucleoporin p58/p45 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XJS7
Nucleotide Protein Strain
Heading Accession and Version

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