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SDC4 syndecan 4 [ Gallus gallus (chicken) ]

Gene ID: 419184, updated on 3-Apr-2024

Summary

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Symbol
SDC4provided by CGNC
Full Name
syndecan 4provided by CGNC
Primary source
CGNC:2883
See related
Ensembl:ENSGALG00010021717
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
syndecan-4
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (5470026..5486674)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (5264634..5281280)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene dysbindin domain containing 2 Neighboring gene TP53 target 5 Neighboring gene SYS1, golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4 Neighboring gene peptidase inhibitor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and genomic organization of chicken syndecan-4. Baciu PC, et al. J Biol Chem, 1994 Jan 7. PMID 8276871
  2. Syndesmos, a protein that interacts with the cytoplasmic domain of syndecan-4, mediates cell spreading and actin cytoskeletal organization. Baciu PC, et al. J Cell Sci, 2000 Jan. PMID 10633082
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4
Names
heparan sulfate proteoglycan
syndecan 4 (amphiglycan, ryudocan)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007869.2 → NP_001007870.1  syndecan-4 precursor

    See identical proteins and their annotated locations for NP_001007870.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000328
    UniProtKB/Swiss-Prot
    P49416
    UniProtKB/TrEMBL
    A0A8V0ZLU0
    Related
    ENSGALP00010031687.1, ENSGALT00010052781.1
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 195
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5470026..5486674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046902826.1 → XP_046758782.1  syndecan-4 isoform X3

  2. XM_046902825.1 → XP_046758781.1  syndecan-4 isoform X1

  3. XM_046902827.1 → XP_046758783.1  syndecan-4 isoform X3

  4. XM_040650672.2 → XP_040506606.1  syndecan-4 isoform X2

    UniProtKB/TrEMBL
    A0A452J7Z2, A0A8V0ZLU0
    Related
    ENSGALP00010031678.1, ENSGALT00010052772.1
    Conserved Domains (1) summary
    smart00294
    Location:156 → 173
    4.1m; putative band 4.1 homologues' binding motif

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5264634..5281280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930659.1 → XP_046786615.1  syndecan-4 isoform X3

  2. XM_046930656.1 → XP_046786612.1  syndecan-4 isoform X1

  3. XM_046930660.1 → XP_046786616.1  syndecan-4 isoform X3

  4. XM_046930657.1 → XP_046786613.1  syndecan-4 isoform X2

    UniProtKB/TrEMBL
    A0A452J7Z2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49416.1 GenPept UniProtKB/Swiss-Prot:P49416

Gene LinkOut

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