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OTUD4 OTU deubiquitinase 4 [ Gallus gallus (chicken) ]

Gene ID: 422463, updated on 18-Aug-2021

Summary

Symbol
OTUD4provided by CGNC
Full Name
OTU deubiquitinase 4provided by CGNC
Primary source
CGNC:51745
See related
Ensembl:ENSGALG00000009968
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See OTUD4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (30599884..30630426, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 4 NC_052576.1 (30551825..30582360, complement)
104 previous assembly GRCg6a (GCF_000002315.5) 4 NC_006091.5 (31025570..31056113, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 4 NC_006091.4 (31278644..31305964, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 10 Neighboring gene hedgehog interacting protein Neighboring gene ATP binding cassette subfamily E member 1 Neighboring gene SMAD family member 1 Neighboring gene methylmalonic aciduria (cobalamin deficiency) cblA type

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
OTU domain-containing protein 4
Names
HIV-1 induced protein HIN-1
OTU domain containing 4
XP_015132202.2
XP_015132203.2
XP_025005687.2
XP_040525953.1
XP_040525954.1
XP_040525955.1
XP_040525956.1
XP_040525957.1
XP_040525958.1
XP_040556215.1
XP_040556216.1
XP_040556217.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    30599884..30630426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040700282.1XP_040556216.1  OTU domain-containing protein 4 isoform X3

    Conserved Domains (4) summary
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PHA03247
    Location:337664
    PHA03247; large tegument protein UL36; Provisional
    PRK12678
    Location:9181100
    PRK12678; transcription termination factor Rho; Provisional
    pfam15822
    Location:537653
    MISS; MAPK-interacting and spindle-stabilizing protein-like
  2. XM_025149919.2XP_025005687.2  OTU domain-containing protein 4 isoform X1

    Conserved Domains (3) summary
    PTZ00449
    Location:521801
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9461128
    PRK12678; transcription termination factor Rho; Provisional
  3. XM_015276717.3XP_015132203.2  OTU domain-containing protein 4 isoform X2

    Conserved Domains (3) summary
    PTZ00449
    Location:521776
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9211103
    PRK12678; transcription termination factor Rho; Provisional
  4. XM_015276716.3XP_015132202.2  OTU domain-containing protein 4 isoform X1

    Conserved Domains (3) summary
    PTZ00449
    Location:521801
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9461128
    PRK12678; transcription termination factor Rho; Provisional
  5. XM_040700281.1XP_040556215.1  OTU domain-containing protein 4 isoform X2

    Conserved Domains (3) summary
    PTZ00449
    Location:521776
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9211103
    PRK12678; transcription termination factor Rho; Provisional
  6. XM_040700283.1XP_040556217.1  OTU domain-containing protein 4 isoform X4

    Conserved Domains (1) summary
    smart00333
    Location:285342
    TUDOR; Tudor domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    30551825..30582360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040670023.1XP_040525957.1  OTU domain-containing protein 4 isoform X3

    Conserved Domains (4) summary
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PHA03247
    Location:337664
    PHA03247; large tegument protein UL36; Provisional
    PRK12678
    Location:9181100
    PRK12678; transcription termination factor Rho; Provisional
    pfam15822
    Location:537653
    MISS; MAPK-interacting and spindle-stabilizing protein-like
  2. XM_040670019.1XP_040525953.1  OTU domain-containing protein 4 isoform X1

    Conserved Domains (3) summary
    PTZ00449
    Location:521801
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9461128
    PRK12678; transcription termination factor Rho; Provisional
  3. XM_040670021.1XP_040525955.1  OTU domain-containing protein 4 isoform X2

    Conserved Domains (3) summary
    PTZ00449
    Location:521776
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9211103
    PRK12678; transcription termination factor Rho; Provisional
  4. XM_040670020.1XP_040525954.1  OTU domain-containing protein 4 isoform X1

    Conserved Domains (3) summary
    PTZ00449
    Location:521801
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9461128
    PRK12678; transcription termination factor Rho; Provisional
  5. XM_040670022.1XP_040525956.1  OTU domain-containing protein 4 isoform X2

    Conserved Domains (3) summary
    PTZ00449
    Location:521776
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00333
    Location:285342
    TUDOR; Tudor domain
    PRK12678
    Location:9211103
    PRK12678; transcription termination factor Rho; Provisional
  6. XM_040670024.1XP_040525958.1  OTU domain-containing protein 4 isoform X4

    Conserved Domains (1) summary
    cl02573
    Location:285342
    Tudor_SF; Tudor domain superfamily
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