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C4orf48 chromosome 4 open reading frame 48 [ Gallus gallus (chicken) ]

Gene ID: 422894, updated on 3-Apr-2024

Summary

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Symbol
C4orf48provided by CGNC
Full Name
chromosome 4 open reading frame 48provided by CGNC
Primary source
CGNC:51847
See related
Ensembl:ENSGALG00010016731
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C4H4ORF48
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (82611652..82638791, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (82589873..82617004, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase nu Neighboring gene uncharacterized LOC107053322 Neighboring gene N-acetyltransferase 8 like Neighboring gene uncharacterized LOC107056398 Neighboring gene uncharacterized LOC422895 Neighboring gene negative elongation factor complex member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. International Chicken Genome Sequencing Consortium. Nature, 2004 Dec 9. PMID 15592404
  2. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
neuropeptide-like protein C4orf48 homolog
NP_001280102.1
XP_040554998.1
XP_046772339.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293173.2 → NP_001280102.1  neuropeptide-like protein C4orf48 homolog

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000074
    Conserved Domains (1) summary
    pfam15161
    Location:60 → 120
    Neuropep_like; Neuropeptide-like

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    82611652..82638791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040699064.2 → XP_040554998.1  neuropeptide-like protein C4orf48 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0YQU6, A0A8V0YX83
    Related
    ENSGALP00010023384.1, ENSGALT00010040323.1
    Conserved Domains (1) summary
    pfam15161
    Location:60 → 115
    Neuropep_like; Neuropeptide-like

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    82589873..82617004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916383.1 → XP_046772339.1  neuropeptide-like protein C4orf48 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0YX83
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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