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SPON2 spondin 2 [ Gallus gallus (chicken) ]

Gene ID: 422905, updated on 5-Mar-2024

Summary

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Symbol
SPON2provided by CGNC
Full Name
spondin 2provided by CGNC
Primary source
CGNC:66446
See related
Ensembl:ENSGALG00010017676
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SPON2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (84353762..84409207)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (84332320..84387751)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene macrophage erythroblast attacher Neighboring gene C-terminal binding protein 1 Neighboring gene uncharacterized LOC121110769 Neighboring gene uncharacterized LOC124417967 Neighboring gene transmembrane emp24 protein transport domain containing 11 Neighboring gene ring finger protein 212

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spondin-2
Names
spondin 2, extracellular matrix protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    84353762..84409207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015285992.4 → XP_015141478.1  spondin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PVD0, A0A8V0YVX0
    Conserved Domains (2) summary
    pfam06468
    Location:42 → 229
    Spond_N; Spondin_N
    pfam19028
    Location:277 → 329
    TSP1_spondin; Spondin-like TSP1 domain

  2. XM_040700314.2 → XP_040556248.1  spondin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PVD0, A0A8V0YVX0
    Related
    ENSGALP00010025228.1, ENSGALT00010042738.1
    Conserved Domains (2) summary
    pfam06468
    Location:42 → 229
    Spond_N; Spondin_N
    pfam19028
    Location:277 → 329
    TSP1_spondin; Spondin-like TSP1 domain

  3. XM_004936233.5 → XP_004936290.3  spondin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YVX0
    Related
    ENSGALP00010025225.1, ENSGALT00010042735.1
    Conserved Domains (1) summary
    smart00209
    Location:336 → 386
    TSP1; Thrombospondin type 1 repeats

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    84332320..84387751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040671703.2 → XP_040527637.1  spondin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PVD0, A0A8V0YVX0
    Conserved Domains (2) summary
    pfam06468
    Location:42 → 229
    Spond_N; Spondin_N
    pfam19028
    Location:277 → 329
    TSP1_spondin; Spondin-like TSP1 domain

  2. XM_040671704.2 → XP_040527638.1  spondin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PVD0, A0A8V0YVX0
    Conserved Domains (2) summary
    pfam06468
    Location:42 → 229
    Spond_N; Spondin_N
    pfam19028
    Location:277 → 329
    TSP1_spondin; Spondin-like TSP1 domain

  3. XM_040671702.2 → XP_040527636.1  spondin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YVX0
    Conserved Domains (2) summary
    pfam06468
    Location:99 → 286
    Spond_N; Spondin_N
    pfam19028
    Location:334 → 386
    TSP1_spondin; Spondin-like TSP1 domain
Nucleotide Protein Strain
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