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SGPL1 sphingosine-1-phosphate lyase 1 [ Gallus gallus (chicken) ]

Gene ID: 423714, updated on 5-Mar-2024

Summary

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Official Symbol
SGPL1provided by CGNC
Official Full Name
sphingosine-1-phosphate lyase 1provided by CGNC
Primary source
CGNC:52033
See related
Ensembl:ENSGALG00010020311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SGPL1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (12300593..12328264)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (12346556..12374232)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene steroidogenic acute regulatory protein, mitochondrial-like Neighboring gene microsomal triglyceride transfer protein-like Neighboring gene uncharacterized LOC124418060 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene unc-5 netrin receptor B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphinganine-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate lyase 1
NP_001007947.1
XP_015143693.2
XP_015143694.1
XP_015143695.1
XP_046776132.1
XP_046776133.1
XP_046776134.1
XP_046776135.1
XP_046798825.1
XP_046798826.1
XP_046798827.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007946.3 → NP_001007947.1  sphingosine-1-phosphate lyase 1

    See identical proteins and their annotated locations for NP_001007947.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000230
    UniProtKB/TrEMBL
    Q5ZMK8
    Conserved Domains (1) summary
    cd06450
    Location:138 → 500
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12300593..12328264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942869.1 → XP_046798825.1  sphingosine-1-phosphate lyase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZCP9

  2. XM_015288209.4 → XP_015143695.1  sphingosine-1-phosphate lyase 1 isoform X2

    UniProtKB/TrEMBL
    F1NMD8
    Related
    ENSGALP00010028981.1, ENSGALT00010049023.1
    Conserved Domains (1) summary
    cd06450
    Location:126 → 488
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

  3. XM_046942870.1 → XP_046798826.1  sphingosine-1-phosphate lyase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZCP9

  4. XM_015288207.4 → XP_015143693.2  sphingosine-1-phosphate lyase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZCP9
    Related
    ENSGALP00010028980.1, ENSGALT00010049020.1
    Conserved Domains (1) summary
    cd06450
    Location:173 → 535
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

  5. XM_046942871.1 → XP_046798827.1  sphingosine-1-phosphate lyase 1 isoform X2

    UniProtKB/TrEMBL
    F1NMD8

  6. XM_015288208.3 → XP_015143694.1  sphingosine-1-phosphate lyase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZK58
    Related
    ENSGALP00010028979.1, ENSGALT00010049019.1
    Conserved Domains (1) summary
    cd06450
    Location:150 → 512
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12346556..12374232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046920178.1 → XP_046776134.1  sphingosine-1-phosphate lyase 1 isoform X2

    UniProtKB/TrEMBL
    F1NMD8

  2. XM_046920176.1 → XP_046776132.1  sphingosine-1-phosphate lyase 1 isoform X4

  3. XM_046920179.1 → XP_046776135.1  sphingosine-1-phosphate lyase 1 isoform X2

    UniProtKB/TrEMBL
    F1NMD8

  4. XM_046920177.1 → XP_046776133.1  sphingosine-1-phosphate lyase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZK58
Nucleotide Protein Strain
Heading Accession and Version

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