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LOC423719 proactivator polypeptide-like [ Gallus gallus (chicken) ]

Gene ID: 423719, updated on 19-Sep-2023

Summary

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Symbol
LOC423719provided by CGNC
Full Name
proactivator polypeptide-likeprovided by CGNC
Primary source
CGNC:52035
See related
Ensembl:ENSGALG00010020066
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

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See LOC423719 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (12646076..12655472, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (12691957..12701744, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 29 member 3 Neighboring gene cadherin related 23 Neighboring gene V-set immunoregulatory receptor Neighboring gene prosaposin Neighboring gene uncharacterized LOC121111122 Neighboring gene carbohydrate sulfotransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12646076..12655472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025151706.3 → XP_025007474.2  prosaposin isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZD09
    Conserved Domains (2) summary
    smart00741
    Location:305 → 380
    SapB; Saposin (B) Domains
    cl02494
    Location:485 → 514
    SapA; Saposin A-type domain

  2. XM_015288261.4 → XP_015143747.2  prosaposin isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5R8
    Related
    ENSGALP00010028596.1, ENSGALT00010048495.1
    Conserved Domains (2) summary
    smart00741
    Location:306 → 374
    SapB; Saposin (B) Domains
    cl02494
    Location:451 → 480
    SapA; Saposin A-type domain

  3. XM_025151705.3 → XP_025007473.2  prosaposin isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZD09, A0A8V0ZJ19
    Related
    ENSGALP00010028592.1, ENSGALT00010048488.1
    Conserved Domains (2) summary
    smart00741
    Location:306 → 381
    SapB; Saposin (B) Domains
    cl02494
    Location:486 → 515
    SapA; Saposin A-type domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12691957..12701744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040674463.2 → XP_040530397.1  prosaposin isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZD09
    Conserved Domains (2) summary
    smart00741
    Location:305 → 380
    SapB; Saposin (B) Domains
    cl02494
    Location:485 → 514
    SapA; Saposin A-type domain

  2. XM_040674464.2 → XP_040530398.1  prosaposin isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5R8
    Conserved Domains (2) summary
    smart00741
    Location:306 → 374
    SapB; Saposin (B) Domains
    cl02494
    Location:451 → 480
    SapA; Saposin A-type domain

  3. XM_040674462.2 → XP_040530396.1  prosaposin isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZD09
    Conserved Domains (2) summary
    smart00741
    Location:306 → 381
    SapB; Saposin (B) Domains
    cl02494
    Location:486 → 515
    SapA; Saposin A-type domain
Nucleotide Protein
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