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RNPC3 RNA binding region (RNP1, RRM) containing 3 [ Gallus gallus (chicken) ]

Gene ID: 424458, updated on 5-Mar-2024

Summary

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Symbol
RNPC3provided by CGNC
Full Name
RNA binding region (RNP1, RRM) containing 3provided by CGNC
Primary source
CGNC:3844
See related
Ensembl:ENSGALG00010023227
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RNPC3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (10802797..10817319, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (10818823..10833344, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene hepatic amylase pseudogene Neighboring gene amylase, alpha 1A; hepatic Neighboring gene collagen type XI alpha 1 chain Neighboring gene microRNA 6561 Neighboring gene uncharacterized LOC107053980 Neighboring gene uncharacterized LOC121111394

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U12 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 40; RNA-binding region-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10802797..10817319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015290803.4 → XP_015146289.3  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  2. XM_025153040.3 → XP_025008808.2  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Related
    ENSGALP00010034376.1, ENSGALT00010056634.1
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  3. XM_015290804.4 → XP_015146290.3  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  4. XM_040704929.2 → XP_040560863.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

RNA

  1. XR_003076408.3 RNA Sequence

  2. XR_003076407.3 RNA Sequence

  3. XR_005861920.2 RNA Sequence

  4. XR_005861919.2 RNA Sequence

  5. XR_003076406.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10818823..10833344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040677648.2 → XP_040533582.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  2. XM_040677647.2 → XP_040533581.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  3. XM_040677650.2 → XP_040533584.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

  4. XM_040677649.2 → XP_040533583.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A8V0ZU58
    Conserved Domains (1) summary
    smart00360
    Location:32 → 101
    RRM; RNA recognition motif

RNA

  1. XR_005852160.2 RNA Sequence

  2. XR_005852159.2 RNA Sequence

  3. XR_005852158.2 RNA Sequence

  4. XR_005852156.2 RNA Sequence

  5. XR_005852157.2 RNA Sequence

Nucleotide Protein Strain
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