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CG17270 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42462, updated on 10-May-2024

Summary

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Official Symbol
CG17270provided by FlyBase
Primary source
FLYBASE:FBgn0038828
Locus tag
Dmel_CG17270
See related
AllianceGenome:FB:FBgn0038828
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-Liu; Dmel\CG17270
Summary
Predicted to enable protein-macromolecule adaptor activity. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in adult head and organism. Orthologous to human ERG28 (ergosterol biosynthesis 28 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG17270 in Genome Data Viewer
Location:
93A1-93A1; 3-69 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20816445..20818929, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16642167..16644651, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Syncrip Neighboring gene Tak1-like 1 Neighboring gene Fancd2 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein S20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. Vinci G, et al. PLoS One, 2008 Aug 6. PMID 18682733, Free PMC Article
  2. Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity. Laver JD, et al. Nucleic Acids Res, 2013 Nov. PMID 23945942, Free PMC Article
  3. A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries. Slaidina M, et al. Genome Res, 2021 Oct. PMID 34389661, Free PMC Article
  4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
  5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG17270-PA
CG17270-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    20816445..20818929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142658.3 → NP_650915.1  uncharacterized protein Dmel_CG17270, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650915.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8ST95, Q9VDI6
    Related
    FBpp0083398
    Conserved Domains (1) summary
    pfam03694
    Location:16 → 125
    Erg28; Erg28 like protein

  2. NM_001275856.1 → NP_001262785.1  uncharacterized protein Dmel_CG17270, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262785.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8ST95, Q9VDI6
    Conserved Domains (1) summary
    pfam03694
    Location:16 → 125
    Erg28; Erg28 like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VDI6 Q9VDI6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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