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NEIL3 nei like DNA glycosylase 3 [ Gallus gallus (chicken) ]

Gene ID: 428750, updated on 5-Mar-2024

Summary

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Symbol
NEIL3provided by CGNC
Full Name
nei like DNA glycosylase 3provided by CGNC
Primary source
CGNC:8147
See related
Ensembl:ENSGALG00010004472
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (41811778..41830556, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (41758389..41777154, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110691 Neighboring gene uncharacterized LOC112532296 Neighboring gene uncharacterized LOC121113205 Neighboring gene aspartylglucosaminidase Neighboring gene uncharacterized LOC124417904

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endonuclease 8-like 3
Names
nei endonuclease VIII-like 3
XP_025005717.2
XP_025005718.2
XP_040526333.1
XP_040526334.1
XP_040526337.1
XP_040555442.1
XP_040555443.1
XP_046772713.1
XP_046772714.1
XP_426306.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    41811778..41830556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025149949.3 → XP_025005717.2  endonuclease 8-like 3 isoform X2

    Conserved Domains (4) summary
    cd08969
    Location:1 → 136
    MeNeil3_N; N-terminal domain of metazoan Nei-like glycosylase 3 (NEIL3)
    PRK01103
    Location:53 → 225
    PRK01103; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
    sd00029
    Location:265 → 284
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:245 → 264
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  2. XM_426306.7 → XP_426306.4  endonuclease 8-like 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XH96
    Related
    ENSGALP00010006080.1, ENSGALT00010010429.1
    Conserved Domains (4) summary
    cd08969
    Location:1 → 136
    MeNeil3_N; N-terminal domain of metazoan Nei-like glycosylase 3 (NEIL3)
    COG0266
    Location:37 → 266
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:306 → 325
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:286 → 305
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  3. XM_040699508.2 → XP_040555442.1  endonuclease 8-like 3 isoform X4

    Conserved Domains (4) summary
    COG0266
    Location:8 → 195
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:235 → 254
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:215 → 234
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl03119
    Location:8 → 65
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases

  4. XM_025149950.2 → XP_025005718.2  endonuclease 8-like 3 isoform X3

    Conserved Domains (4) summary
    COG0266
    Location:5 → 197
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:237 → 256
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:217 → 236
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl03119
    Location:1 → 67
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases

  5. XM_040699509.1 → XP_040555443.1  endonuclease 8-like 3 isoform X4

    Conserved Domains (4) summary
    COG0266
    Location:8 → 195
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:235 → 254
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:215 → 234
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl03119
    Location:8 → 65
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases

RNA

  1. XR_005859317.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    41758389..41777154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040670400.2 → XP_040526334.1  endonuclease 8-like 3 isoform X2

    Conserved Domains (4) summary
    cd08969
    Location:1 → 136
    MeNeil3_N; N-terminal domain of metazoan Nei-like glycosylase 3 (NEIL3)
    PRK01103
    Location:53 → 225
    PRK01103; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
    sd00029
    Location:265 → 284
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:245 → 264
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  2. XM_040670399.2 → XP_040526333.1  endonuclease 8-like 3 isoform X1

    Conserved Domains (4) summary
    cd08969
    Location:1 → 136
    MeNeil3_N; N-terminal domain of metazoan Nei-like glycosylase 3 (NEIL3)
    COG0266
    Location:37 → 266
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:306 → 325
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:286 → 305
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

  3. XM_040670403.2 → XP_040526337.1  endonuclease 8-like 3 isoform X4

    Conserved Domains (4) summary
    COG0266
    Location:8 → 195
    Nei; Formamidopyrimidine-DNA glycosylase [Replication, recombination and repair]
    sd00029
    Location:235 → 254
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00030
    Location:215 → 234
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl03119
    Location:7 → 65
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases

  4. XM_046916757.1 → XP_046772713.1  endonuclease 8-like 3 isoform X3

  5. XM_046916758.1 → XP_046772714.1  endonuclease 8-like 3 isoform X4

RNA

  1. XR_005849369.2 RNA Sequence

Nucleotide Protein Strain
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