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SYDE1 synapse defective Rho GTPase homolog 1 [ Gallus gallus (chicken) ]

Gene ID: 429892, updated on 7-Aug-2021

Summary

Symbol
SYDE1provided by CGNC
Full Name
synapse defective Rho GTPase homolog 1provided by CGNC
Primary source
CGNC:53800
See related
Ensembl:ENSGALG00000050416
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See SYDE1 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
8
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 30 NC_052561.1 (201691..209756, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 30 Unlocalized Scaffold NW_024096184.1 (173700..181662)
104 previous assembly GRCg6a (GCF_000002315.5) 30 NC_028739.2 (706023..714019, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) Unplaced Scaffold NT_470824.1 (803..6749, complement)

Chromosome 30 - NC_052561.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112530991 Neighboring gene ilvB acetolactate synthase like Neighboring gene uncharacterized LOC112530999 Neighboring gene macrophage mannose receptor 1-like Neighboring gene uncharacterized LOC121107796 Neighboring gene patatin like phospholipase domain containing 6

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
rho GTPase-activating protein SYDE1; synapse defective Rho GTPase homolog 1
Names
rho GTPase-activating protein SYDE1-like
synapse defective 1, Rho GTPase, homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052561.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    201691..209756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025145753.2XP_025001521.1  rho GTPase-activating protein SYDE1

    Related
    ENSGALP00000071668.1
    Conserved Domains (1) summary
    cl02570
    Location:491702
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NW_024096184.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    173700..181662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040694486.1XP_040550420.1  rho GTPase-activating protein SYDE1

    Conserved Domains (2) summary
    PHA03307
    Location:32322
    PHA03307; transcriptional regulator ICP4; Provisional
    cl02570
    Location:491702
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
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