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nr4a1 nuclear receptor subfamily 4, group A, member 1 [ Danio rerio (zebrafish) ]

Gene ID: 431720, updated on 16-May-2021

Summary

Official Symbol
nr4a1provided by ZNC
Official Full Name
nuclear receptor subfamily 4, group A, member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040704-11
See related
Ensembl:ENSDARG00000000796
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
NGF; NUR77; zgc:92434
Orthologs
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Genomic context

See nr4a1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (32151330..32157937, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (32224800..32231403, complement)
103 previous assembly Zv9 (GCF_000002035.4) 23 NC_007134.5 (32389897..32396487, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zgc:56699 Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog 3 Neighboring gene uncharacterized LOC103909698 Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene diacylglycerol kinase, alpha a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables glucocorticoid receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
nuclear receptor subfamily 4 group A member 1
Names
NGFIB
neural orphan nuclear receptor NUR77

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002173.1NP_001002173.1  nuclear receptor subfamily 4 group A member 1

    See identical proteins and their annotated locations for NP_001002173.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074092
    UniProtKB/TrEMBL
    Q6GMG3
    Related
    ENSDARP00000001911.9, ENSDART00000000876.11
    Conserved Domains (2) summary
    cd07348
    Location:337574
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:237311
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    32151330..32157937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001797330.2 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395161.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    102848..109338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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