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LOC4324384 calmodulin [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324384, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4324384
Gene description
calmodulin
Locus tag
OSNPB_010267900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CAM; CAM1; CaM-1; CAM1-1; CAM1-2; CAM1-3; OsJ_25643; OsJ_001186; OsJ_010214; OsJ_024630; OJ1150_E04.120-1; OJ1200_C08.124-1
Expression
Ubiquitous expression in roots before flowering (RPKM 145.4), leaves after flowering (RPKM 100.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9195526..9198964, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene SUN domain-containing protein 1 Neighboring gene serine/threonine-protein kinase-like protein At5g23170 Neighboring gene probable peptide/nitrate transporter At3g43790 Neighboring gene DNA gyrase subunit B, chloroplastic/mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-1
Names
Calmodulin-1
LOC_Os01g16240
LOC_Os03g20370
LOC_Os07g48780
P0011D01.22
XP_015622341.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428106.1 → NP_001415035.1  calmodulin-1

    Status: VALIDATED

    Source sequence(s)
    AU184693, AU312213, CB651035
    UniProtKB/Swiss-Prot
    A2WN93, A2XG28, A2YQ37, A2ZRL4, A3BNK8, A6N0J2, B7EHB8, O49184, P29612, Q0JNS6, Q10M88, Q7F8I8
    UniProtKB/TrEMBL
    B8AC80

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    9195526..9198964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766855.2 → XP_015622341.1  calmodulin-1

    Conserved Domains (1) summary
    PTZ00184
    Location:1 → 149
    PTZ00184; calmodulin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JNS6.2 GenPept UniProtKB/Swiss-Prot:Q0JNS6

Gene LinkOut

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Molecular Biology Databases
Research Materials