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LOC4324466 probable Histone-lysine N-methyltransferase ATXR5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324466, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4324466
Gene description
probable Histone-lysine N-methyltransferase ATXR5
Locus tag
OSNPB_010965500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 4.9), flower buds (RPKM 3.3) and 6 other tissues See more
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Genomic context

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See LOC4324466 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42567792..42573080)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937632 Neighboring gene uridylate kinase Neighboring gene coiled-coil domain-containing protein R3HCC1L Neighboring gene uncharacterized LOC4324468

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable Histone-lysine N-methyltransferase ATXR5
Names
Os01g0965500
P0458E05.18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    42567792..42573080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776902.2 → XP_015632388.1  probable Histone-lysine N-methyltransferase ATXR5 isoform X1

    Conserved Domains (2) summary
    cd15545
    Location:70 → 114
    PHD_BAZ2A_like; PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B)
    pfam00856
    Location:267 → 365
    SET; SET domain

  2. XM_015776910.2 → XP_015632396.1  probable Histone-lysine N-methyltransferase ATXR5 isoform X2

    UniProtKB/TrEMBL
    A3A1U9, B8A9M3, Q8LHD6
    Conserved Domains (2) summary
    cd15545
    Location:70 → 114
    PHD_BAZ2A_like; PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B)
    cd10539
    Location:248 → 385
    SET_ATXR5_6-like; SET domain found in fungal protein lysine methyltransferase SET5 and similar protein
Nucleotide Protein
Heading Accession and Version

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