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LOC4324605 cytochrome P450 72A15 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324605, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4324605
Gene description
cytochrome P450 72A15
Locus tag
OSNPB_010602500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CYP72A33
Expression
Biased expression in leaves after flowering (RPKM 60.3), roots after flowering (RPKM 42.5) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23682272..23685523, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 72A15 Neighboring gene cytochrome P450 72A15 Neighboring gene chalcone synthase-like Neighboring gene inactive protein kinase SELMODRAFT_444075

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis. Saika H, et al. Plant Physiol, 2014 Nov. PMID 24406793, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 72A15
Names
B1085F01.12
Os01g0602500
P0518F01.34
cytochrome P450 (CYP72C)-like
cytochrome P450 monooxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23682272..23685523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793290.2 → XP_015648776.1  cytochrome P450 72A15 isoform X1

    UniProtKB/TrEMBL
    A0A0E3VYD2
    Conserved Domains (1) summary
    cl41757
    Location:97 → 529
    cytochrome_P450; cytochrome P450 (CYP) superfamily

  2. XM_026026947.1 → XP_025882732.1  cytochrome P450 72A15 isoform X2

    Conserved Domains (1) summary
    cl12078
    Location:6 → 332
    p450; Cytochrome P450
Nucleotide Protein
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