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LOC4326657 cytochrome P450 72A15 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326657, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4326657
Gene description
cytochrome P450 72A15
Locus tag
OSNPB_010627500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Rice2; CYP72A18
Expression
Ubiquitous expression in roots before flowering (RPKM 91.2), leaves before flowering (RPKM 65.6) and 6 other tissues See more
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Genomic context

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See LOC4326657 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25045618..25049411, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH144 Neighboring gene cytochrome P450 72A13 Neighboring gene cytochrome P450 72A14-like Neighboring gene cytochrome P450 72A13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 72A15
Names
Os01g0627500
P0006C01.34
P0688A04.12
cytochrome P450 monooxygenase
cytochrome P450-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25045618..25049411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760381.2 → XP_015615867.1  cytochrome P450 72A15

    UniProtKB/TrEMBL
    A0A0P0V5H6, B8AC00, B9EY59, Q9FDZ1
    Conserved Domains (1) summary
    cd20642
    Location:90 → 518
    CYP72; cytochrome P450 family 72
Nucleotide Protein
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