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LOC4330612 aldehyde dehydrogenase family 2 member B7, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330612, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4330612
Gene description
aldehyde dehydrogenase family 2 member B7, mitochondrial
Locus tag
OSNPB_020730000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Aldh2a
Expression
Broad expression in flowers (RPKM 39.8), milk grains (RPKM 37.5) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30393293..30396790, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX16-like Neighboring gene E3 ubiquitin-protein ligase ATL41-like Neighboring gene RING-H2 finger protein ATL40 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog Neighboring gene potassium transporter 25-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The trihelix transcription factor OsGTγ-2 is involved adaption to salt stress in rice. Liu X, et al. Plant Mol Biol, 2020 Jul. PMID 32504260
  2. Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions. Nakazono M, et al. Plant Physiol, 2000 Oct. PMID 11027709, Free PMC Article
  3. Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice. Li Y, et al. Gene, 2000 May 16. PMID 10831839
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aldehyde dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aldehyde dehydrogenase family 2 member B7, mitochondrial
Names
OSJNBa0072H09.28-1
OSJNBa0072H09.28-2
Os02g0730000
P0617A09.7-1
P0617A09.7-2
mitochondrial aldehyde dehydrogenase ALDH2a
putative mitochondrial aldehyde dehydrogenase ALDH2a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    30393293..30396790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769962.2 → XP_015625448.1  aldehyde dehydrogenase family 2 member B7, mitochondrial

    UniProtKB/TrEMBL
    B8AI10, B9F2I7, Q6YWR0, Q9LRI6
    Conserved Domains (1) summary
    PLN02466
    Location:1 → 553
    PLN02466; aldehyde dehydrogenase family 2 member
Nucleotide Protein
Heading Accession and Version

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