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LOC4331166 serine/threonine-protein phosphatase PP1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331166, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4331166
Gene description
serine/threonine-protein phosphatase PP1
Locus tag
OSNPB_020820000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0474F11.8; OJ1202_E07.27
Expression
Ubiquitous expression in leaves before flowering (RPKM 143.1), leaves after flowering (RPKM 138.7) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35207612..35211437, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C24H6.02c Neighboring gene protein LYK5 Neighboring gene RING-H2 finger protein ATL1 Neighboring gene protein KINESIN LIGHT CHAIN-RELATED 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase PP1
Names
Os02g0820000
protein phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35207612..35211437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769900.1 → XP_015625386.1  serine/threonine-protein phosphatase PP1 isoform X2

    UniProtKB/TrEMBL
    B8AF75, B9F4J1, Q0DWD5, Q6K9Q5, Q94F84
    Conserved Domains (1) summary
    cd07414
    Location:6 → 295
    MPP_PP1_PPKL; PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain

  2. XM_026022998.1 → XP_025878783.1  serine/threonine-protein phosphatase PP1 isoform X1

    UniProtKB/TrEMBL
    Q0DWD5
    Conserved Domains (1) summary
    cd07414
    Location:6 → 295
    MPP_PP1_PPKL; PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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