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LOC4332845 tubby-like F-box protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332845, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4332845
Gene description
tubby-like F-box protein 6
Locus tag
OSNPB_030351400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TULP6; OsTLP6; TULP14; OsTLP14; OsJ_010398
Expression
Ubiquitous expression in flowers (RPKM 12.4), flower buds (RPKM 7.2) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13164494..13169290, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Neighboring gene inactive beta-amylase 9 Neighboring gene superoxide dismutase [Cu-Zn] 1-like Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubby-like F-box protein 6
Names
LOC_Os03g22800
Tubby-like F-box protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417784.1 → NP_001404713.1  tubby-like F-box protein 6

    Status: VALIDATED

    Source sequence(s)
    AK102370, AP014959, CF305169, CI193732, D48402
    UniProtKB/Swiss-Prot
    Q0DRV7, Q10LG7, Q10LG8
    UniProtKB/TrEMBL
    A2XGP5

  2. NM_001417785.1 → NP_001404714.1  tubby-like F-box protein 6

    Status: VALIDATED

    Source sequence(s)
    AK102370, AP014959, CF305169, CI193732, D48402
    UniProtKB/Swiss-Prot
    Q0DRV7, Q10LG7, Q10LG8
    UniProtKB/TrEMBL
    A2XGP5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    13164494..13169290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775966.2 → XP_015631452.1  tubby-like F-box protein 6

    UniProtKB/Swiss-Prot
    Q10LG8
    Conserved Domains (2) summary
    pfam01167
    Location:115 → 398
    Tub; Tub family
    pfam12937
    Location:52 → 94
    F-box-like

  2. XM_015775965.2 → XP_015631451.1  tubby-like F-box protein 6

    UniProtKB/Swiss-Prot
    Q10LG8
    Conserved Domains (2) summary
    pfam01167
    Location:115 → 398
    Tub; Tub family
    pfam12937
    Location:52 → 94
    F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10LG8.1 GenPept UniProtKB/Swiss-Prot:Q10LG8

Gene LinkOut

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