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LOC4334469 DEAD-box ATP-dependent RNA helicase 27-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334469, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4334469
Gene description
DEAD-box ATP-dependent RNA helicase 27-like
Locus tag
OSNPB_030802700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_12997
Expression
Ubiquitous expression in flower buds (RPKM 34.1), mature seeds (RPKM 28.3) and 6 other tissues See more
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Genomic context

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See LOC4334469 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33489613..33493527, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334465 Neighboring gene AAA-ATPase At3g28580 Neighboring gene AAA-ATPase At3g28580 Neighboring gene DDT domain-containing protein DDR4 Neighboring gene transcription factor BHLH089-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD-box ATP-dependent RNA helicase 27
Names
LOC_Os03g58810
OSJNBa0087C10.12
XP_015631966.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418843.1 → NP_001405772.1  DEAD-box ATP-dependent RNA helicase 27

    Status: VALIDATED

    Source sequence(s)
    AK288909, CF325885, CI386178, CI519589, CV720579, EL586693
    UniProtKB/Swiss-Prot
    A0A0P0W4K7, Q84T03
    UniProtKB/TrEMBL
    A2XN12

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    33489613..33493527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776480.1 → XP_015631966.1  DEAD-box ATP-dependent RNA helicase 27

    UniProtKB/Swiss-Prot
    Q84T03
    Conserved Domains (1) summary
    COG0513
    Location:94 → 589
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84T03.1 GenPept UniProtKB/Swiss-Prot:Q84T03

Gene LinkOut

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Molecular Biology Databases
Research Materials