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LOC4334604 dolichyl-phosphate beta-glucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334604, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4334604
Gene description
dolichyl-phosphate beta-glucosyltransferase
Locus tag
OSNPB_030821800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 27.9), roots after flowering (RPKM 23.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34498209..34501300, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2C 35-like Neighboring gene pentatricopeptide repeat-containing protein At4g21065 Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene expansin-A7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-phosphate beta-glucosyltransferase
Names
Os03g0821800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    34498209..34501300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772944.2 → XP_015628430.1  dolichyl-phosphate beta-glucosyltransferase

    UniProtKB/TrEMBL
    A0A8J8Y8B0, B9F708, Q0DM95, Q10BK3, Q851Z9
    Conserved Domains (1) summary
    cd04188
    Location:88 → 323
    DPG_synthase; DPG_synthase is involved in protein N-linked glycosylation
Nucleotide Protein
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