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LOC4334766 DNA-directed RNA polymerases II, IV and V subunit 8B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334766, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4334766
Gene description
DNA-directed RNA polymerases II, IV and V subunit 8B
Locus tag
OSNPB_030845700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 21.0), flower buds (RPKM 18.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35562850..35565291, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene probable acyl-activating enzyme 16, chloroplastic Neighboring gene probable glucan endo-1,3-beta-glucosidase A6 Neighboring gene uncharacterized LOC4334767 Neighboring gene uncharacterized LOC107280417

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases II, IV and V subunit 8B
Names
Os03g0845700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35562850..35565291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777530.2 → XP_015633016.1  DNA-directed RNA polymerases II, IV and V subunit 8B

    UniProtKB/TrEMBL
    A0A0P0W5Q8, Q75LB1, Q84SP5
    Conserved Domains (1) summary
    pfam03870
    Location:10 → 146
    RNA_pol_Rpb8; RNA polymerase Rpb8
Nucleotide Protein
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