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LOC4335860 cellulose synthase-like protein H2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335860, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4335860
Gene description
cellulose synthase-like protein H2
Locus tag
OSNPB_040429500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CSLH2; OsCslH2
Expression
Ubiquitous expression in flowers (RPKM 41.9), flower buds (RPKM 23.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21279838..21285506, complement)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 27 Neighboring gene transcription factor bHLH95 Neighboring gene transcription factor bHLH95 Neighboring gene putative cellulose synthase-like protein H3 Neighboring gene nicotinate phosphoribosyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein H2
Names
LOC_Os04g35020
OSJNBa0042L16.13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21279838..21285506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779351.2 → XP_015634837.2  cellulose synthase-like protein H2

    UniProtKB/Swiss-Prot
    Q0JD62, Q7XUT9
    Conserved Domains (1) summary
    cl28038
    Location:94 → 771
    Cellulose_synt; Cellulose synthase
Nucleotide Protein
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