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LOC4337303 PHD finger-like domain-containing protein 5B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337303, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4337303
Gene description
PHD finger-like domain-containing protein 5B
Locus tag
OSNPB_040663300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 35.5), flowers (RPKM 28.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33854463..33856550, complement)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 32 Neighboring gene zinc finger CCCH domain-containing protein 30-like Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein Neighboring gene WUSCHEL-related homeobox 1A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger-like domain-containing protein 5B
Names
Os04g0663300

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419913.1 → NP_001406842.1  PHD finger-like domain-containing protein 5B

    Status: VALIDATED

    Source sequence(s)
    CI278545, CI536344, CV731961
    UniProtKB/TrEMBL
    A0A0P0WG29, A2XYL9, B9FHH6, Q01K32, Q7XM15

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    33854463..33856550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780796.1 → XP_015636282.1  PHD finger-like domain-containing protein 5B

    UniProtKB/TrEMBL
    Q7XM15
    Conserved Domains (1) summary
    pfam03660
    Location:1 → 104
    PHF5; PHF5-like protein
Nucleotide Protein
Heading Accession and Version

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