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LOC4337993 ubiquitin-conjugating enzyme E2 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337993, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4337993
Gene description
ubiquitin-conjugating enzyme E2 2
Locus tag
OSNPB_050182500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 116.9), flowers (RPKM 115.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4958264..4964923)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280909 Neighboring gene hypoxanthine-guanine phosphoribosyltransferase Neighboring gene FACT complex subunit SSRP1-B-like Neighboring gene uncharacterized LOC4337995

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 2
Names
Os05g0182500
XP_015640111.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420219.1 → NP_001407148.1  ubiquitin-conjugating enzyme E2 2

    Status: VALIDATED

    Source sequence(s)
    AU164240, CF279080, CF292302, CI029959
    UniProtKB/TrEMBL
    B8AYY8, B9FMU1, Q0DK90

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    4958264..4964923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784625.2 → XP_015640111.1  ubiquitin-conjugating enzyme E2 2

    UniProtKB/TrEMBL
    Q0DK90
    Conserved Domains (1) summary
    pfam00179
    Location:8 → 145
    UQ_con; Ubiquitin-conjugating enzyme
Nucleotide Protein
Heading Accession and Version

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