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LOC4338660 UDP-sulfoquinovose synthase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338660, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4338660
Gene description
UDP-sulfoquinovose synthase, chloroplastic
Locus tag
OSNPB_050387200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 105.6), roots after flowering (RPKM 56.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18738600..18741790)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 Neighboring gene uncharacterized LOC112936017 Neighboring gene protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE-like Neighboring gene serine/threonine-protein kinase-like protein At3g51990

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDPsulfoquinovose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-sulfoquinovose synthase, chloroplastic
Names
Os05g0387200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18738600..18741790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784260.2 → XP_015639746.1  UDP-sulfoquinovose synthase, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0WM00, A2Y473, B9FI18, Q60E66
    Conserved Domains (1) summary
    PLN02572
    Location:38 → 479
    PLN02572; UDP-sulfoquinovose synthase
Nucleotide Protein
Heading Accession and Version

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