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Igkv6-32 immunoglobulin kappa variable 6-32 [ Mus musculus (house mouse) ]

Gene ID: 434039, updated on 8-Feb-2024

Summary

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Official Symbol
Igkv6-32provided by MGI
Official Full Name
immunoglobulin kappa variable 6-32provided by MGI
Primary source
MGI:MGI:3641634
See related
Ensembl:ENSMUSG00000076576 IMGT/GENE-DB:IGKV6-32; AllianceGenome:MGI:3641634
Gene type
other
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
19-32; Gm10882; Igkv6-b; Igk-v19-32
Summary
Predicted to be involved in immune response. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
6 C1; 6 31.74 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (70051008..70051568, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (70074024..70074584, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa chain complex Neighboring gene STARR-seq mESC enhancer starr_16222 Neighboring gene STARR-seq mESC enhancer starr_16224 Neighboring gene STARR-seq mESC enhancer starr_16225 Neighboring gene immunoglobulin kappa variable 8-34 Neighboring gene immunoglobulin kappa chain variable 7-33 Neighboring gene immunoglobulin kappa chain variable 8-31 Neighboring gene immunoglobulin kappa chain variable 8-30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural differences in a single gene encoding the V kappa Ser group of light chains explain the existence of two mouse light-chain genetic markers. Boyd RT, et al. Proc Natl Acad Sci U S A, 1986 Dec. PMID 3097643, Free PMC Article
  2. T-Cell-dependent antibody response to the dominant epitope of streptococcal polysaccharide, N-acetyl-glucosamine, is cross-reactive with cardiac myosin. Malkiel S, et al. Infect Immun, 2000 Oct. PMID 10992488, Free PMC Article
  3. Characteristics of the immunoglobulin Vkappa genes, pseudogenes, relics and orphons in the mouse genome. Schäble KF, et al. Eur J Immunol, 1999 Jul. PMID 10427970
  4. IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Giudicelli V, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608191, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • immunoglobulin kappa chain variable 6-32
  • immunoglobulin light chain variable region

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in immunoglobulin production IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005612.1 

    Range
    2519044..2519604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    70051008..70051568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.