U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4341282 40S ribosomal protein S24-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341282, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4341282
Gene description
40S ribosomal protein S24-1
Locus tag
OSNPB_060555400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 191.8), flowers (RPKM 127.6) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4341282 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21163223..21167157)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 42-like Neighboring gene uncharacterized LOC112939301 Neighboring gene tRNA A64-2'-O-ribosylphosphate transferase Neighboring gene amino acid permease 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
40S ribosomal protein S24-1
Names
Os06g0555400
P0458E11.17
putative 40S ribosomal protein S24

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21163223..21167157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788209.1 → XP_015643695.1  40S ribosomal protein S24-1

    UniProtKB/TrEMBL
    A2ZXD8, B8B3L8, B9FTR3, Q5Z9S4
    Conserved Domains (1) summary
    PTZ00071
    Location:5 → 130
    PTZ00071; 40S ribosomal protein S24; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials