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LOC4341569 stromal processing peptidase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341569, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4341569
Gene description
stromal processing peptidase, chloroplastic-like
Locus tag
OSNPB_060625400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 258.7), roots after flowering (RPKM 208.5) and 6 other tissues See more
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Genomic context

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See LOC4341569 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25200337..25210585, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene protein LYK5 Neighboring gene protein LYK5 Neighboring gene peroxiredoxin-2E-1, chloroplastic-like Neighboring gene probable glucomannan 4-beta-mannosyltransferase 9 Neighboring gene pentatricopeptide repeat-containing protein At4g16470

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stromal processing peptidase, chloroplastic-like
Names
OSJNBa0029G06.38-1
OSJNBa0072A21.7-1
Os06g0625400
putative metalloendopeptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25200337..25210585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787825.1 → XP_015643311.1  stromal processing peptidase, chloroplastic-like isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0WZ97, B7ECD6, B8B0E2, B9FQ02, Q0DAU7, Q69TY5
    Conserved Domains (2) summary
    COG0612
    Location:172 → 408
    PqqL; Predicted Zn-dependent peptidase [General function prediction only]
    pfam05193
    Location:916 → 1140
    Peptidase_M16_C; Peptidase M16 inactive domain

  2. XM_026026130.1 → XP_025881915.1  stromal processing peptidase, chloroplastic-like isoform X2

    Conserved Domains (3) summary
    COG0612
    Location:20 → 160
    PqqL; Predicted Zn-dependent peptidase [General function prediction only]
    pfam05193
    Location:668 → 892
    Peptidase_M16_C; Peptidase M16 inactive domain
    cl25707
    Location:100 → 337
    Peptidase_M16_C; Peptidase M16 inactive domain
Nucleotide Protein
Heading Accession and Version

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