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LOC4343123 mitochondrial pyruvate carrier 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343123, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4343123
Gene description
mitochondrial pyruvate carrier 4
Locus tag
OSNPB_070449100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1047_A06.120
Expression
Ubiquitous expression in flowers (RPKM 36.7), flower buds (RPKM 31.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15421667..15425219, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene aquaporin PIP2-5-like Neighboring gene probable aquaporin PIP2-1 Neighboring gene two-component response regulator ORR7-like Neighboring gene 60S ribosomal protein L44

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial pyruvate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial pyruvate carrier 4
Names
Os07g0449100
light induced protein like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    15421667..15425219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789632.2 → XP_015645118.1  mitochondrial pyruvate carrier 4

    UniProtKB/TrEMBL
    A0A0P0X5N8, A2YKV5, A2YU79, Q0D6R3, Q7XIT4
    Conserved Domains (1) summary
    pfam03650
    Location:4 → 108
    MPC; Uncharacterized protein family (UPF0041)
Nucleotide Protein
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