U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4343168 DNA-directed RNA polymerases II, IV and V subunit 6A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343168, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4343168
Gene description
DNA-directed RNA polymerases II, IV and V subunit 6A
Locus tag
OSNPB_070463100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1634_H04.114
Expression
Ubiquitous expression in mature seeds (RPKM 66.7), flower buds (RPKM 49.4) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16289953..16293457, complement)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase 13 Neighboring gene 5-pentadecatrienyl resorcinol O-methyltransferase Neighboring gene non-specific lipid-transfer protein Cw18 Neighboring gene E3 ubiquitin-protein ligase At1g12760

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerases II, IV and V subunit 6A
Names
Os07g0463100
putative DNA-directed RNA polymerase Iia

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16289953..16293457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789509.2 → XP_015644995.1  DNA-directed RNA polymerases II, IV and V subunit 6A

    UniProtKB/TrEMBL
    A2YL15, A3BJH6, Q0D6M7, Q8LI69
    Conserved Domains (1) summary
    PLN00152
    Location:5 → 133
    PLN00152; DNA-directed RNA polymerase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials