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LOC4346215 hydroxymethylglutaryl-CoA synthase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346215, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4346215
Gene description
hydroxymethylglutaryl-CoA synthase
Locus tag
OSNPB_080544900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 35.6), roots before flowering (RPKM 29.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27302238..27306854)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346212 Neighboring gene transcription factor PCF2-like Neighboring gene molybdenum cofactor sulfurase 3 Neighboring gene sorbitol dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxymethylglutaryl-CoA synthase
Names
Os08g0544900
P0623F08.33
putative hydroxymethylglutaryl coenzyme A synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403686.1 → NP_001390615.1  hydroxymethylglutaryl-CoA synthase

    Status: VALIDATED

    Source sequence(s)
    AK102923, CI646556
    UniProtKB/TrEMBL
    A0A0P0XI32, Q0J3Z1, Q6ZBH5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    27302238..27306854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794629.2 → XP_015650115.1  hydroxymethylglutaryl-CoA synthase

    UniProtKB/TrEMBL
    Q6ZBH5
    Conserved Domains (1) summary
    PLN02577
    Location:3 → 467
    PLN02577; hydroxymethylglutaryl-CoA synthase
Nucleotide Protein
Heading Accession and Version

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