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LOC4346811 protein transport protein Sec61 subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346811, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4346811
Gene description
protein transport protein Sec61 subunit alpha
Locus tag
OSNPB_090347700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0698G06.1
Expression
Ubiquitous expression in milk grains (RPKM 64.5), leaves after flowering (RPKM 64.3) and 6 other tissues See more
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Genomic context

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See LOC4346811 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10915274..10919400, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene protein transport protein Sec61 subunit alpha Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene probable histone acetyltransferase type B catalytic subunit Neighboring gene nicotinamide/nicotinic acid mononucleotide adenylyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-translational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Sec61 translocon complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec61 subunit alpha
Names
Os09g0347700
P0512H04.21
putative Sec61 alpha form 2
sec 61 alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    10915274..10919400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756837.2 → XP_015612323.1  protein transport protein Sec61 subunit alpha

    UniProtKB/TrEMBL
    A0A0P0VUM8, A0A0P0XMB4, B8BEQ0, Q6ES11, Q6ES89
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional
Nucleotide Protein
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