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LOC4347176 cytochrome P450 71A1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347176, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347176
Gene description
cytochrome P450 71A1
Locus tag
OSNPB_090441400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0046G12.6; OJ1344_B01.40
Expression
Broad expression in roots before flowering (RPKM 437.9), leaves after flowering (RPKM 29.7) and 4 other tissues See more
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Genomic context

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See LOC4347176 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16387706..16390391)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.8 Neighboring gene flavonoid 3'-monooxygenase Neighboring gene cytochrome P450 71A1 Neighboring gene small nucleolar RNA Z247

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 71A1
Names
Os09g0441400
putative elicitor-inducible cytochrome P450

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16387706..16390391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756939.2 → XP_015612425.1  cytochrome P450 71A1

    UniProtKB/TrEMBL
    A2Z1P8, Q0J1G6, Q69P73
    Conserved Domains (1) summary
    cd20618
    Location:67 → 498
    CYP71_clan; Plant cytochrome P450s, clan CYP71
Nucleotide Protein
Heading Accession and Version

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