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LOC4347183 ATP-dependent DNA helicase DDM1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347183, updated on 11-Apr-2024

Summary

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Gene symbol
LOC4347183
Gene description
ATP-dependent DNA helicase DDM1
Locus tag
OSNPB_090442700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsDDM1a
Expression
Biased expression in flower buds (RPKM 4.9), flowers (RPKM 4.5) and 3 other tissues See more
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Genomic context

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See LOC4347183 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16461636..16467674, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene protein GAMETE EXPRESSED 1 Neighboring gene probable GTP diphosphokinase RSH3, chloroplastic Neighboring gene uncharacterized LOC4347184 Neighboring gene O-fucosyltransferase 35

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin. Tan F, et al. Plant Physiol, 2018 Jul. PMID 29794169, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent DNA helicase DDM1
Names
Os09g0442700
P0046G12.27
chromatin remodeling factor DDM1a
putative chromatin complex subunit A101

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16461636..16467674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756135.2 → XP_015611621.1  ATP-dependent DNA helicase DDM1

    UniProtKB/TrEMBL
    A0A8J8YIA8, B9G3V4, Q05KP6, Q67UT8
    Conserved Domains (1) summary
    PLN03142
    Location:96 → 764
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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