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LOC4347235 transmembrane protein 50 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347235, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347235
Gene description
transmembrane protein 50 homolog
Locus tag
OSNPB_090453000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 54.7), flower buds (RPKM 53.0) and 6 other tissues See more
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Genomic context

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See LOC4347235 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16988201..16990462, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene ubiquitin Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene beta-1,3-galactosyltransferase 7 Neighboring gene uncharacterized LOC4347236 Neighboring gene transmembrane emp24 domain-containing protein p24delta4 Neighboring gene annexin D8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 50 homolog
Names
Os09g0453000
P0488D02.18-1
P0488D02.18-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16988201..16990462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795880.1 → XP_015651366.1  transmembrane protein 50 homolog

    UniProtKB/TrEMBL
    A2Z1Y0, Q0J1B1, Q67UZ7
    Conserved Domains (1) summary
    pfam05255
    Location:15 → 135
    UPF0220; Uncharacterized protein family (UPF0220)
Nucleotide Protein
Heading Accession and Version

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