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LOC4347238 annexin D8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347238, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347238
Gene description
annexin D8
Locus tag
OSNPB_090453300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in milk grains (RPKM 15.5), mature seeds (RPKM 6.2) and 3 other tissues See more
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Genomic context

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See LOC4347238 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16999326..17001369, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 50 homolog Neighboring gene uncharacterized LOC4347236 Neighboring gene transmembrane emp24 domain-containing protein p24delta4 Neighboring gene thylakoidal processing peptidase 1, chloroplastic Neighboring gene nuclear pore complex protein NUP58

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
annexin D8
Names
Os09g0453300
P0488D02.22-1
putative fiber annexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16999326..17001369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756190.2 → XP_015611676.1  annexin D8

    UniProtKB/TrEMBL
    B8BCJ7, B9G3Y7, G8E493, Q67UZ4
    Conserved Domains (1) summary
    cl02574
    Location:170 → 233
    Annexin
Nucleotide Protein
Heading Accession and Version

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