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Gm5643 predicted gene 5643 [ Mus musculus (house mouse) ]

Gene ID: 434858, updated on 8-Feb-2024

Summary

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Official Symbol
Gm5643provided by MGI
Official Full Name
predicted gene 5643provided by MGI
Gene description
heterogeneous nuclear ribonucleoprotein A1 pseudogene
Primary source
MGI:MGI:3642955
See related
AllianceGenome:MGI:3642955
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG434858
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Genomic context

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Location:
X F2; X 63.1 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (141080501..141082233)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (142297505..142299237)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene retinoblastoma binding protein 7 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chrX:138662261-138662562 Neighboring gene nuclear transport factor 2-like export factor 2 Neighboring gene potassium voltage-gated channel subfamily E regulatory subunit 5 Neighboring gene acyl-CoA synthetase long-chain family member 4 Neighboring gene STARR-seq mESC enhancer starr_48018

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • heterogeneous nuclear ribonucleoprotein A1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002883.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL731672

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    141080501..141082233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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